Installation-guide.md

@@ -20,9 +20,64 @@ Installation with spectroscopic data
 1. Start from Initial step -> 5
 2. Download spectroscopic data zip files
 3. Moves them in YAFITS_HOME/spectro/mongo-seed/data
-4. Comment/Uncomment content of YAFITS_HOME/spectro/mongo-seed/Dockerfile and YAFITS_HOME/spectro/mongo-seed/import.sh according to the data zip files you wish to enable
-4. Go back to YAFITS_HOME
-5. Execute ./yafits updatespectro
+4. Comment/Uncomment content of YAFITS_HOME/spectro/mongo-seed/Dockerfile
+
+```
+# example where only local.json file is enabled
+# metadata is required
+COPY ./data/local.json.zip /local.json.zip
+#COPY ./data/cdms.json.zip /cdms.json.zip
+#COPY ./data/jpl.json.zip /jpl.json.zip
+#COPY ./data/ISM_cdms.json.zip /ISM_cdms.json.zip
+#COPY ./data/ISM_CSM_cdms.json.zip /ISM_CSM_cdms.json.zip
+COPY ./data/metadata.json.zip /metadata.json.zip
+
+RUN unzip /local.json.zip
+#RUN unzip /cdms.json.zip
+#RUN unzip /jpl.json.zip
+#RUN unzip /ISM_cdms.json.zip
+#RUN unzip /ISM_CSM_cdms.json.zip
+RUN unzip /metadata.json.zip
+
+RUN rm /local.json.zip
+#RUN rm /cdms.json.zip
+#RUN rm /jpl.json.zip
+#RUN rm /ISM_cdms.json.zip
+#RUN rm /ISM_CSM_cdms.json.zip
+RUN rm /metadata.json.zip 
+```
+
+4. Comment/Uncomment content of YAFITS_HOME/spectro/mongo-seed/import.sh
+
+```
+# example where only local.json file is enabled
+# metadata is required
+# removes old databases
+mongo spectroscopy --eval "db.dropDatabase()"
+# import available json files
+#mongoimport --host mongodb --db spectroscopy --collection cdms   --file /cdms.json
+#mongoimport --host mongodb --db spectroscopy --collection ism  --file /ISM_cdms.json
+#mongoimport --host mongodb --db spectroscopy --collection ismcsm  --file /ISM_CSM_cdms.json
+#mongoimport --host mongodb --db spectroscopy --collection jpl --file /jpl.json
+mongoimport --host mongodb --db spectroscopy --collection local  --file /local.json
+mongoimport --host mongodb --db spectroscopy --collection metadata --file /metadata.json
+
+# create indexes
+#mongo --host mongodb spectroscopy --eval "db.ism.createIndex({sourcefile:1})"
+#mongo --host mongodb spectroscopy --eval "db.ism.createIndex({frequency:1})"
+
+#mongo --host mongodb spectroscopy --eval "db.ismcsm.createIndex({sourcefile:1})"
+#mongo --host mongodb spectroscopy --eval "db.ismcsm.createIndex({frequency:1})"
+
+#mongo --host mongodb spectroscopy --eval "db.jpl.createIndex({sourcefile:1})"
+#mongo --host mongodb spectroscopy --eval "db.jpl.createIndex({frequency:1})"
+
+#mongo --host mongodb spectroscopy --eval "db.cdms.createIndex({sourcefile:1})"
+#mongo --host mongodb spectroscopy --eval "db.cdms.createIndex({frequency:1})"
+```
+
+5. Go back to YAFITS_HOME
+6. Execute ./yafits updatespectro
 
 
 Running the application in background