read routines and examples implementation

more metadata are written in hdf5 amr cubes
the reading procedure are finished
an example of reading program is given
everything should be tested

amr2cell_hdf5/src/Makefile

@@ -16,12 +16,12 @@ SRC = char_utils_m.f90			\
 	index_m.f90			\
 	ramses_info_m.f90 		\
 	amr2cell_hdf5_parameters_m.f90	\
+	ramses_hydro_descriptor_m.f90	\
 	cell_m.f90			\
 	cells_array_m.f90		\
 	cube_m.f90			\
 	cubes_array_m.f90		\
 	ramses_hydro_header_m.f90	\
-	ramses_hydro_descriptor_m.f90	\
 	ramses_hydro_data_m.f90		\
 	ramses_amr_header_m.f90 	\
 	ramses_amr_data_m.f90		\

amr2cell_hdf5/src/Makefile.read_cell_hdf5

+include ../../Make.inc
+
+EXE = read_cell_hdf5.exe
+
+COMMONDIR = ../../common/src/
+OBJDIR=../../obj/
+MODDIR=../../mod/
+VPATH= $(COMMONDIR):.
+
+SRC = char_utils_m.f90			\
+	error_handling_m.f90		\
+	constants_m.f90			\
+	mpi_process_m.f90		\
+	timer_m.f90 			\
+    mpi_utils_m.f90     \
+	shared_variables_m.f90 		\
+	index_m.f90			\
+	ramses_info_m.f90 		\
+	ramses_hydro_descriptor_m.f90	\
+	amr2cell_hdf5_parameters_m.f90	\
+	cell_m.f90			\
+	cells_array_m.f90		\
+	cube_m.f90			\
+	cubes_array_m.f90		\
+	ramses_hydro_header_m.f90	\
+	ramses_hydro_data_m.f90		\
+	ramses_amr_header_m.f90 	\
+	ramses_amr_data_m.f90		\
+	ramses_output_m.f90		\
+	ramses_output_to_cells_m.f90	\
+	read_cell_hdf5.f90
+
+OBJS_NOPREFIX=$(SRC:%.f90=%.o)
+OBJS=$(addprefix $(OBJDIR), $(OBJS_NOPREFIX))
+
+# variable containing if git is used or not
+ifeq ($(wildcard ../../.git/HEAD ../../.git/index),)
+	OBJ_GIT =
+	USE_GIT =
+else
+	USE_GIT = $(shell which git)
+	OBJ_GIT = ../../.git/HEAD ../../.git/index
+endif
+
+
+$(OBJDIR)%.o:%.f90
+	@echo "--------------------------------"
+	@echo building $*.o with parameters \
+	FC=$(FC), FCFLAGS=$(FCFLAGS)
+	$(FC) -c $(FCFLAGS) $< -o $@
+
+$(MODDIR)%.mod:%.f90
+	@echo "--------------------------------"
+	@echo building $*.mod with parameters \
+	FC=$(FC), FCFLAGS=$(FCFLAGS)
+	$(FC) -c $(FCFLAGS) $<
+
+
+all: directories release
+release: $(EXE)
+debug: FCFLAGS = $(DEBUGFLAGS)
+debug: $(EXE)
+
+$(EXE) : gitversion $(OBJS)
+	@echo "--------------------------------"
+	@echo $(ROOT_PFOF)
+	@echo building $(EXE) with parameters \
+	FC=$(FC), LDFLAGS=$(LDFLAGS)
+	$(FC) -g -o $(EXE) $(OBJS) $(LDFLAGS)
+
+cleanall :
+	@echo "--------------------------------"
+	@echo cleaning compiled objects, modules and executable
+	rm -f $(OBJDIR)*.o $(MODDIR)*.mod *~ $(EXE) $(COMMONDIR)/gitversion.h
+
+clean:
+	@echo "--------------------------------"
+	@echo cleaning executable
+	rm -f  $(EXE)
+
+
+# create file for git version
+gitversion: $(OBJ_GIT)
+ifneq ($(USE_GIT), )
+	@cd $(COMMONDIR) ;\
+	echo "#define GITVERSION \"$(shell git rev-parse HEAD)\"" > gitversion.h
+else
+	@cd $(COMMONDIR) ;\
+	echo "#define GITVERSION \"no_version_found\"" > gitversion.h
+endif
+
+directories: ${MODDIR} ${OBJDIR}
+
+${OBJDIR}:
+	${MKDIR_P} $@
+
+${MODDIR}:
+	${MKDIR_P} $@
+
+
+.PHONY: gitversion clean cleanall directories all

amr2cell_hdf5/src/amr2cell_hdf5.f90

@@ -56,7 +56,7 @@ program amr2cell_hdf5
   type(ramses_output_t) :: ramses_output
 
   call mpi_init(mpierr)
-  call Hdf5_init()
+  call hdf5_init()
 
   call timer%Init()
 
@@ -90,14 +90,14 @@ program amr2cell_hdf5
 
   call cubes_array%Associate(cells_array, global_cells_per_cube)
 
-  call cubes_array%Write(amr2cell_hdf5_parameters)
+  call cubes_array%Write(amr2cell_hdf5_parameters, ramses_output%hydro_descriptor)
 
   call timer%Finalize()
   if ( mpi_process%rank == 0 ) then
      call timer%Print(OUTPUT_UNIT)
   end if
 
-  call Hdf5_finalize()
+  call hdf5_finalize()
   call mpi_finalize(mpierr)
 
 end program amr2cell_hdf5

amr2cell_hdf5/src/amr2cell_hdf5_parameters_m.f90

@@ -321,7 +321,7 @@ contains
   subroutine Read_hdf5_amr2cell_hdf5_parameters(this, hdf5_id, mpi_process)
 
     use fortran_hdf5_constants_m, only : H5_STR_LEN
-    use fortran_hdf5_manage_groups_m, only : Hdf5_close_group, Hdf5_create_group
+    use fortran_hdf5_manage_groups_m, only : Hdf5_close_group, Hdf5_open_group
     use fortran_hdf5_read_attribute_m, only : Hdf5_read_attr
     use hdf5, only : HID_T
     use mpi_process_m, only : mpi_process_t

amr2cell_hdf5/src/cell_m.f90

@@ -40,8 +40,8 @@ module cell_m
   public :: cell_t, Init_cell_mpi_type
 
   type cell_t(n_non_thermal_pressures, n_passive_scalars)
-     integer, len :: n_non_thermal_pressures
-     integer, len :: n_passive_scalars
+     integer(kind=4), len :: n_non_thermal_pressures
+     integer(kind=4), len :: n_passive_scalars
      integer(kind=4) :: level
      integer(kind=4) :: process_id
      integer(kind=4) :: cube_id
@@ -56,7 +56,8 @@ module cell_m
      procedure :: Is_eq
      procedure :: Is_sup
      procedure :: Print => Print_cell
-     procedure :: Write => Write_hdf5_cell
+     procedure :: Read_hdf5 => Read_hdf5_cell
+     procedure :: Write_hdf5 => Write_hdf5_cell
   end type cell_t
 
 contains
@@ -250,6 +251,56 @@ contains
 
   end subroutine Print_cell
 
+  !------------------------------------------------------------------------------------------------------------------------------------
+  subroutine Read_hdf5_cell(this, hdf5_id)
+
+   use char_utils_m, only : Int_to_char12, Int_to_char5
+   use fortran_hdf5_constants_m
+   use fortran_hdf5_manage_groups_m
+   use fortran_hdf5_read_attribute_m
+   use fortran_hdf5_read_data_m
+   use hdf5
+
+   class(cell_t(*,*)),intent(inout) :: this
+   integer(kind=hid_t),intent(in) :: hdf5_id
+
+   character(len=H5_STR_LEN) :: attr_name
+   character(len=H5_STR_LEN) :: groupname
+   integer(kind=hid_t) :: cell_gr_id
+   integer :: idim
+
+#ifdef DEBUG
+   write(ERROR_UNIT,'(a,i0)') 'Read_hdf5_cell begins on process', mpi_process%rank
+#endif
+   call timer%Set_ref()
+
+   attr_name = 'identity'
+   call Hdf5_Read_data(hdf5_id, attr_name, this%identity)
+   attr_name = 'level'
+   call Hdf5_Read_attr(hdf5_id, attr_name, this%level)
+   attr_name = 'position'
+   call Hdf5_Read_attr(hdf5_id, attr_name, 3, this%position)
+   attr_name = 'velocity field'
+   call Hdf5_Read_attr(hdf5_id, attr_name, 3, this%velocity_field)
+   attr_name = 'density'
+   call Hdf5_Read_attr(hdf5_id, attr_name, this%density)
+   attr_name = 'thermal pressure'
+   call Hdf5_Read_attr(hdf5_id, attr_name, this%thermal_pressure)
+   if ( this%n_non_thermal_pressures /= 0 ) then
+      attr_name = 'non thermal pressures'
+!      call Hdf5_Read_attr(hdf5_id, attr_name, this%n_non_thermal_pressures, this%non_thermal_pressures)
+   end if
+   if( this%n_passive_scalars /= 0 ) then 
+      attr_name = 'passive scalars'
+      call Hdf5_Read_attr(hdf5_id, attr_name, this%n_passive_scalars, this%passive_scalars)
+   end if
+
+   call timer%Inc_inp()
+#ifdef DEBUG
+   write(ERROR_UNIT,'(a,i0)') 'Read_hdf5_cell ends on process', mpi_process%rank
+#endif
+
+ end subroutine Read_hdf5_cell
 
   !------------------------------------------------------------------------------------------------------------------------------------
   subroutine Write_hdf5_cell(this, hdf5_id)

amr2cell_hdf5/src/cells_array_m.f90

@@ -327,7 +327,7 @@ contains
   end subroutine Distribute_cells_array
 
   !------------------------------------------------------------------------------------------------------------------------------------
-  subroutine Read_hdf5_cells_array(this, hdf5_id)
+  subroutine Read_hdf5_cells_array(this, hdf5_id, ramses_hydro_descriptor)
 
     use char_utils_m, only : int_to_char12
     use fortran_hdf5_constants_m
@@ -335,23 +335,28 @@ contains
     use fortran_hdf5_read_attribute_m
     use fortran_hdf5_read_data_m
     use hdf5
+    use ramses_hydro_descriptor_m, only : ramses_hydro_descriptor_t
 
     class(cells_array_t),intent(out) :: this
     integer(kind=hid_t),intent(in) :: hdf5_id
+    type(ramses_hydro_descriptor_t), intent(in) :: ramses_hydro_descriptor
 
     character(len=H5_STR_LEN) :: attr_name
     character(len=H5_STR_LEN) :: groupname
     integer(kind=hid_t) :: cell_gr_id
     integer :: icell
+    integer(IDKIND) :: ncells
+    integer(kind=4) :: nps
+    integer(kind=4) :: nthp
 
 #ifdef DEBUG
     write(ERROR_UNIT,'(a,i0)') 'Read_hdf5_cells_array begins on process', mpi_process%rank
 #endif
     ! read number of cells in this array
     attr_name = 'ncells'
-    call Hdf5_read_data(hdf5_id,attr_name,ncells)
+    call Hdf5_read_data(hdf5_id,attr_name, ncells)
 
-    call this%Allocate(nthp,nps,ncells)
+    call this%Allocate(ramses_hydro_descriptor%n_non_thermal_pressures,ramses_hydro_descriptor%n_passive_scalars,ncells)
 
     do icell = 1, this%ncells
        groupname = 'cell_'//int_to_char12(icell)
@@ -676,7 +681,7 @@ contains
     do icell = 1, this%ncells
        groupname = 'cell_'//int_to_char12(icell)
        call Hdf5_create_group(hdf5_id, groupname, cell_gr_id)
-       call this%elts(icell)%Write(cell_gr_id)
+       call this%elts(icell)%Write_hdf5(cell_gr_id)
        call Hdf5_close_group(cell_gr_id)
     end do
 
@@ -684,7 +689,6 @@ contains
     write(ERROR_UNIT,'(a,i0)') 'Write_hdf5_cells_array ends on process', mpi_process%rank
 #endif
 
-
   end subroutine Write_hdf5_cells_array
 
 end module cells_array_m

amr2cell_hdf5/src/cube_m.f90

@@ -140,18 +140,23 @@ contains
     use fortran_hdf5_manage_groups_m
     use fortran_hdf5_read_attribute_m
     use hdf5
+    use ramses_hydro_descriptor_m, only : ramses_hydro_descriptor_t
     
     class(cube_t), intent(out) :: this
     character(len=H5_FILENAME_LEN), intent(in) :: filename
     type(amr2cell_hdf5_parameters_t), intent(out) :: amr2cell_hdf5_parameters
 
+    integer :: alloc_stat
     integer(kind=hid_t) :: cells_group_id
     integer(kind=hid_t) :: cube_file_id
     integer(kind=hid_t) :: cube_info_id    
+    character(len=ERR_MSG_LEN) :: error_message
     character(len=H5_STR_LEN) :: groupname
     integer :: icell
     integer(HID_T) :: metadata_id
     character(len=H5_STR_LEN) :: metadata_name
+    type(ramses_hydro_descriptor_t) :: ramses_hydro_descriptor
+    character(len=H5_FILENAME_LEN) :: tmpchar    
 
 #ifdef DEBUG
     write(ERROR_UNIT,'(a,i0)') 'Read_hdf5_cube begins on process', mpi_process%rank
@@ -164,6 +169,12 @@ contains
     call Hdf5_open_group(cube_file_id, groupname, metadata_id)
     call this%ramses_info%Read_hdf5(metadata_id,mpi_process)
     call amr2cell_hdf5_parameters%Read_hdf5(metadata_id,mpi_process)
+    call ramses_hydro_descriptor%Read_hdf5(metadata_id)
+
+    allocate(this%center_position(this%ramses_info%ndim), stat=alloc_stat, errmsg=error_message)
+    if(alloc_stat /= 0) then
+       call Allocate_error('this%center_position','Init_cube', error_message, alloc_stat, mpi_process%rank)
+    end if
 
     ! write metadata
     groupname = 'cube_info'
@@ -172,7 +183,8 @@ contains
     metadata_name = 'level'
     call Hdf5_read_attr(cube_info_id, metadata_name, this%level)
     metadata_name = 'filename'
-    call Hdf5_read_attr(cube_info_id, metadata_name, H5_FILENAME_LEN, this%filename)
+    call Hdf5_read_attr(cube_info_id, metadata_name, H5_FILENAME_LEN, tmpchar)
+    this%filename = tmpchar
     metadata_name = 'size'
     call Hdf5_read_attr(cube_info_id, metadata_name, this%size)
     metadata_name = 'center_position'
@@ -189,7 +201,7 @@ contains
 
     groupname = 'cells'
     call Hdf5_open_group(cube_file_id, groupname, cells_group_id)
-    call this%cells_array%Read(cells_group_id)
+    call this%cells_array%Read_hdf5(cells_group_id, ramses_hydro_descriptor)
     call Hdf5_close_group(cells_group_id)
 
     call Hdf5_close_file(cube_file_id)    
@@ -202,7 +214,7 @@ contains
   end subroutine Read_hdf5_cube
 
   !----------------------------------------------------------------------------------------------------------------------------------
-  subroutine Write_hdf5_cube(this, amr2cell_hdf5_parameters)
+  subroutine Write_hdf5_cube(this, amr2cell_hdf5_parameters, ramses_hydro_descriptor)
 
     use amr2cell_hdf5_parameters_m, only : amr2cell_hdf5_parameters_t
     use fortran_hdf5_constants_m
@@ -210,8 +222,10 @@ contains
     use fortran_hdf5_manage_groups_m
     use fortran_hdf5_write_attribute_m
     use hdf5
+    use ramses_hydro_descriptor_m, only : ramses_hydro_descriptor_t
 
     type(amr2cell_hdf5_parameters_t), intent(in) :: amr2cell_hdf5_parameters
+    type(ramses_hydro_descriptor_t), intent(in) :: ramses_hydro_descriptor
     class(cube_t), intent(in) :: this
 
     integer(kind=hid_t) :: cells_group_id
@@ -235,6 +249,7 @@ contains
     call Hdf5_open_group(cube_file_id, groupname, metadata_id)
     call this%ramses_info%Write_hdf5(metadata_id,mpi_process)
     call amr2cell_hdf5_parameters%Write_hdf5(metadata_id,mpi_process)
+    call ramses_hydro_descriptor%Write_hdf5(metadata_id)
 
     ! write metadata
     groupname = 'cube_info'
@@ -260,7 +275,7 @@ contains
 
     groupname = 'cells'
     call Hdf5_create_group(cube_file_id, groupname, cells_group_id)
-    call this%cells_array%Write(cells_group_id)
+    call this%cells_array%Write_hdf5(cells_group_id)
     call Hdf5_close_group(cells_group_id)
 
     call Hdf5_close_file(cube_file_id)

amr2cell_hdf5/src/cubes_array_m.f90

@@ -195,11 +195,13 @@ contains
   end subroutine Init_cubes_array
 
   !----------------------------------------------------------------------------------------------------------------------------------
-  subroutine Write_cubes_array(this,amr2cell_hdf5_parameters)
+  subroutine Write_cubes_array(this,amr2cell_hdf5_parameters, ramses_hydro_descriptor)
 
     use amr2cell_hdf5_parameters_m, only : amr2cell_hdf5_parameters_t
+    use ramses_hydro_descriptor_m, only : ramses_hydro_descriptor_t
 
     type(amr2cell_hdf5_parameters_t), intent(in) :: amr2cell_hdf5_parameters
+    type(ramses_hydro_descriptor_t), intent(in) :: ramses_hydro_descriptor
     class(cubes_array_t), intent(in) :: this
 
     integer :: icube
@@ -212,7 +214,7 @@ contains
 
     do icube = 1, this%ncubes
        if ( this%elts(icube)%process_rank == mpi_process%rank ) then
-          call this%elts(icube)%Write_hdf5(amr2cell_hdf5_parameters)
+          call this%elts(icube)%Write_hdf5(amr2cell_hdf5_parameters, ramses_hydro_descriptor)
        end if
     end do
 

amr2cell_hdf5/src/ramses_hydro_descriptor_m.f90

@@ -146,13 +146,57 @@ contains
   end subroutine Read_ramses_hydro_descriptor
 
 !------------------------------------------------------------------------------------------------------------------------------------
-  subroutine Read_hdf5_ramses_hydro_descriptor
+  subroutine Read_hdf5_ramses_hydro_descriptor(this, hdf5_id)
+
+    use error_handling_m, only : Allocate_error, IO_error, ERR_MSG_LEN
+    use fortran_hdf5_constants_m, only : H5_STR_LEN
+    use fortran_hdf5_manage_groups_m, only : Hdf5_close_group, Hdf5_open_group
+    use fortran_hdf5_read_attribute_m, only : Hdf5_read_attr
+    use hdf5, only : HID_T
+
+    integer(HID_T), intent(in) :: hdf5_id
+    class(ramses_hydro_descriptor_t), intent(out) :: this
+
+    integer :: alloc_stat
+    character(len=H5_STR_LEN) :: aname
+    character(len=ERR_MSG_LEN) :: error_message
+    integer(kind=HID_T) :: gr_id
+    character(len=H5_STR_LEN) :: groupname
+    integer(kind=4) :: iname
+    character(len=H5_STR_LEN), allocatable, dimension(:) :: tmpchar
 
 #ifdef DEBUG
     write(ERROR_UNIT,'(a,i0)') 'Read_hdf5_ramses_hydro_descriptor begins on process', mpi_process%rank
 #endif
 
-call timer%Set_ref()
+    call timer%Set_ref()
+
+    groupname = 'ramses_hydro_descriptor_info'
+    call Hdf5_open_group(hdf5_id,groupname,gr_id)
+
+    aname = 'nvar' 
+    call Hdf5_read_attr(gr_id, aname, this%nvar)
+    aname = 'n_non_thermal_pressures' 
+    call Hdf5_read_attr(gr_id, aname, this%n_non_thermal_pressures)
+    aname = 'n_passive_scalars' 
+    call Hdf5_read_attr(gr_id, aname, this%n_passive_scalars)
+    aname = 'variable_names'
+    allocate(tmpchar(this%nvar), stat=alloc_stat, errmsg=error_message)
+    if(alloc_stat /= 0) then
+       call Allocate_error('tmpchar','Read_hdf5_ramses_hydro_descriptor', &
+            error_message, alloc_stat, mpi_process%rank)
+    end if
+    allocate(this%variable_names(this%nvar), stat=alloc_stat, errmsg=error_message)
+    if(alloc_stat /= 0) then
+       call Allocate_error('this%variable_names','Read_hdf5_ramses_hydro_descriptor', &
+            error_message, alloc_stat, mpi_process%rank)
+    end if
+    call Hdf5_read_attr(gr_id, aname, H5_STR_LEN, this%nvar, tmpchar)
+    do iname = 1, this%nvar
+      this%variable_names(iname)%string = tmpchar(iname)
+    end do
+call Hdf5_close_group(gr_id)
+
 call timer%Inc_inp()
 
 #ifdef DEBUG
@@ -164,6 +208,7 @@ call timer%Inc_inp()
 !------------------------------------------------------------------------------------------------------------------------------------      
   subroutine Write_hdf5_ramses_hydro_descriptor(this, hdf5_id)
 
+    use error_handling_m, only : Allocate_error, IO_error, ERR_MSG_LEN
     use fortran_hdf5_constants_m, only : H5_STR_LEN
     use fortran_hdf5_manage_groups_m, only : Hdf5_close_group, Hdf5_create_group
     use fortran_hdf5_write_attribute_m, only : Hdf5_write_attr
@@ -172,9 +217,13 @@ call timer%Inc_inp()
     class(ramses_hydro_descriptor_t), intent(in) :: this
     integer(HID_T), intent(in) :: hdf5_id
 
-    character(len=H5_STR_LEN) :: groupname
+    integer :: alloc_stat
     character(len=H5_STR_LEN) :: aname
+    character(len=ERR_MSG_LEN) :: error_message
     integer(kind=HID_T) :: gr_id
+    character(len=H5_STR_LEN) :: groupname
+    integer(kind=4) :: iname
+    character(len=H5_STR_LEN), allocatable, dimension(:) :: tmpchar
 
 #ifdef DEBUG
     write(ERROR_UNIT,'(a,i0)') 'Write_hdf5_ramses_hydro_descriptor begins on process', mpi_process%rank
@@ -192,7 +241,15 @@ call timer%Inc_inp()
     aname = 'n_passive_scalars' 
     call Hdf5_write_attr(gr_id, aname, this%n_passive_scalars)
     aname = 'variable_names'
-    call Hdf5_write_attr(gr_id, aname, nvar, this%variable_names)
+    allocate(tmpchar(this%nvar), stat=alloc_stat, errmsg=error_message)
+    if(alloc_stat /= 0) then
+       call Allocate_error('tmpchar','Write_hdf5_ramses_hydro_descriptor', &
+            error_message, alloc_stat, mpi_process%rank)
+    end if    
+    do iname = 1, this%nvar
+      tmpchar(iname) = this%variable_names(iname)%string
+    end do
+    call Hdf5_write_attr(gr_id, aname, this%nvar, tmpchar)
 
     call Hdf5_close_group(gr_id)
 

amr2cell_hdf5/src/read_cell_hdf5.f90

+!------------------------------------------------------------------------------------------------------------------------------------
+! Copyright  2018 Fabrice Roy
+!
+! Contact: fabrice.roy@obspm.fr
+!
+! This file is part of pFoF.
+!
+! pFoF is free software: you can redistribute it and/or modify
+! it under the terms of the GNU General Public License as published by
+! the Free Software Foundation, either version 3 of the License, or
+! (at your option) any later version.
+!
+! pFoF is distributed in the hope that it will be useful,
+! but WITHOUT ANY WARRANTY; without even the implied warranty of
+! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+! GNU General Public License for more details.
+! 
+! You should have received a copy of the GNU General Public License
+! along with pFoF. If not, see <http://www.gnu.org/licenses/>.
+
+!> @file
+!! Program that reads HDF5 'amr_cube' files
+!! @brief
+!! 
+!! @author Fabrice Roy
+
+!> Program that reads HDF5 'amr_cube' files
+!------------------------------------------------------------------------------------------------------------------------------------
+
+program read_cell_hdf5
+        
+    use amr2cell_hdf5_parameters_m, only : amr2cell_hdf5_parameters_t
+    use error_handling_m, only : Allocate_error, ERR_MSG_LEN
+    use cell_m, only : cell_t
+    use cells_array_m, only : cells_array_t
+    use char_utils_m
+    use constants_m, only : IDKIND
+    use cube_m, only : cube_t
+    use fortran_hdf5_manage_interface_m
+    use fortran_hdf5_constants_m
+    use iso_fortran_env, only : OUTPUT_UNIT
+    use mpi
+    use mpi_utils_m
+    use ramses_info_m, only : ramses_info_t
+    use ramses_output_m, only : ramses_output_t
+    use ramses_output_to_cells_m, only : ramses_output_to_cells
+    use shared_variables_m
+  
+    implicit none
+  
+    type(amr2cell_hdf5_parameters_t) :: amr2cell_hdf5_parameters
+    type(cells_array_t) :: cells_array
+    type(cube_t) :: cube
+    character(H5_FILENAME_LEN) :: filename
+    integer(4) :: first_file, last_file, nfile
+    integer :: ifile
+    integer :: mpierr
+  
+    call mpi_init(mpierr)
+    call hdf5_init()
+    call timer%Init()
+
+    call mpi_process%Init()
+
+    nfile = 8
+
+    call Mpi_distribution(first_file, last_file, nfile, mpi_process)
+    
+    do ifile = first_file, last_file
+        filename = 'cube_amr_hydro'//Int_to_char5(ifile)//'.h5'
+        call cube%Read_hdf5(filename, amr2cell_hdf5_parameters)
+    end do
+
+    call timer%Finalize()
+    call timer%Print(OUTPUT_UNIT)
+  
+    call hdf5_finalize()
+    call mpi_finalize(mpierr)
+  
+end program read_cell_hdf5
\ No newline at end of file

common/src/mpi_utils_m.f90

+!------------------------------------------------------------------------------------------------------------------------------------
+! Copyright  2018 Fabrice Roy
+!
+! Contact: fabrice.roy@obspm.fr
+!
+! This file is part of pFoF.
+!
+! pFoF is free software: you can redistribute it and/or modify
+! it under the terms of the GNU General Public License as published by
+! the Free Software Foundation, either version 3 of the License, or