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Summary:
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- [Input file](#input-file)
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- [output_files](#output_files)
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- [target_parameters](#target_parameters)
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- [light_source_parameters](#light_source_parameters)
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- [atmosphere_parameters](#atmosphere_parameters)
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- [species_parameters](#species_parameters)
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- [spectrum_parameters](#spectrum_parameters)
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- [clouds_parameters](#clouds_parameters)
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- [retrieval_parameters](#retrieval_parameters)
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- [options](#options)
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- [paths](#paths)
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- [Code](#code)
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# Input file
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The input file format is [Fortran namelist](https://software.intel.com/content/www/us/en/develop/documentation/fortran-compiler-developer-guide-and-reference/top/language-reference/a-to-z-reference/m-to-n/namelist.html). All of the headers and variables must be present. If your input file does not work, start back with a working example. An input file, _example.nml_ is provided with any distributed version of *Exo-REM*, with a short description of each variables.
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... | ... | @@ -195,11 +209,25 @@ The `atmosphere_parameters` section handles the atmospheric settings. |
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- list of strings
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- absorbing species in atmosphere
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- e.g. `species_names = 'CH4', 'CO', 'CO2', 'FeH', 'H2O', 'H2S', 'HCN', 'K', 'Na', 'NH3', 'PH3', 'TiO', 'VO'`. The number of elements must match `n_species` (see [`atmosphere_parameters`](#atmosphere_parameters)).
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- `species_at_equilibrium`
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- list of booleans
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- if True, the species is at thermochemical equilibrium, else it is out of equilibrium
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- e.g. `species_at_equilibrium = False, False, False, False, False, False, False, False, False, False, False, False, False` To set all the absorbing species in out-of-equilibrium mode. The number of elements must match `n_species` (see [`atmosphere_parameters`](#atmosphere_parameters)).
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- `cia_names`
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- list of strings
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- collision induced absorptions to be included
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- e.g. `cia_names = 'H2-H2', 'H2-He', 'H2O-H2O'`. The number of elements must match `n_cia` (see [`atmosphere_parameters`](#atmosphere_parameters)).
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## spectrum_parameters
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## clouds_parameters
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## retrieval_parameters
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## options
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## paths
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# Code
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**This page is a work in progress**
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... | ... | |